From .. * branch HEAD -> FETCH_HEAD HEAD is now at 1cac5fa Added option to save transform information into files. java/macosx-java3d: locally modified java/win64: locally modified Building fake.jar <- fake/Fake.java Note: fake/Fake.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Building <- fake.jar Building fiji <- fiji.cxx Building <- fiji Building jars/javac.jar <- src-plugins/javac/com/sun/source/tree/A... src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:271: warning: sun.reflect.annotation.ExceptionProxy is Sun proprietary API and may be removed in a future release private static class MirroredTypeExceptionProxy extends ExceptionProxy { ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:307: warning: sun.reflect.annotation.ExceptionProxy is Sun proprietary API and may be removed in a future release private static class MirroredTypesExceptionProxy extends ExceptionProxy { ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:84: warning: sun.reflect.annotation.AnnotationParser is Sun proprietary API and may be removed in a future release return AnnotationParser.annotationForMap(annoType, ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:164: warning: sun.reflect.annotation.ExceptionProxy is Sun proprietary API and may be removed in a future release if (!(value instanceof ExceptionProxy) && ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:165: warning: sun.reflect.annotation.AnnotationType is Sun proprietary API and may be removed in a future release !AnnotationType.invocationHandlerReturnType(returnClass) ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:201: warning: sun.reflect.annotation.ExceptionProxy is Sun proprietary API and may be removed in a future release if (value == null || value instanceof ExceptionProxy) { ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:225: warning: sun.reflect.annotation.EnumConstantNotPresentExceptionProxy is Sun proprietary API and may be removed in a future release value = new EnumConstantNotPresentExceptionProxy( ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:252: warning: sun.reflect.annotation.ExceptionProxy is Sun proprietary API and may be removed in a future release value = new ExceptionProxy() { ^ src-plugins/javac/com/sun/tools/javac/model/AnnotationProxyMaker.java:252: warning: sun.reflect.annotation.ExceptionProxy is Sun proprietary API and may be removed in a future release value = new ExceptionProxy() { ^ 9 warnings Building ij.jar <- jars/javac.jar ImageJA/ Building plugins/loci_tools.jar <- bio-formats/ Building plugins/LSM_Toolbox.jar <- src-plugins/LSM_Toolbox/LSM_To... Building plugins/LSM_Reader.jar <- src-plugins/LSM_Reader/LSM_Read... Note: src-plugins/LSM_Reader/org/imagearchive/lsm/reader/Reader.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Building plugins/VIB_.jar <- plugins/LSM_Toolbox.jar VIB/ Building plugins/mpicbg_.jar <- mpicbg/ Building plugins/bUnwarpJ_.jar <- src-plugins/bUnwarpJ_/bunwarpj/B... Note: src-plugins/bUnwarpJ_/bunwarpj/BSplineModel.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Building plugins/level_sets.jar <- src-plugins/level_sets/levelset... Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Building plugins/Fiji_Plugins.jar <- src-plugins/Fiji_Plugins/fiji... Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Building plugins/TrakEM2_.jar <- ij.jar plugins/VIB_.jar plugins/m... Building jars/clojure.jar <- clojure/ Building jars/clojure-contrib.jar <- jars/clojure.jar clojure-cont... Building plugins/ij-ImageIO_.jar <- ij-plugins/ Building jars/jacl.jar <- tcljava/ Building jars/batik.jar <- batik/ Building jars/junit-4.5.jar <- junit/ Building jars/rsyntaxtextarea.jar <- RSyntaxTextArea/ Building jars/autocomplete.jar <- AutoComplete/ Building plugins/Jython_Interpreter.jar <- src-plugins/Jython/Jyth... Building jars/fiji-scripting.jar <- src-plugins/fiji-scripting/com... Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Note: src-plugins/Jython/Jython_Interpreter.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Building plugins/Clojure_Interpreter.jar <- src-plugins/Clojure/Cl... Note: src-plugins/Clojure/Clojure_Interpreter.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. Building plugins/JRuby_Interpreter.jar <- src-plugins/JRuby/JRuby_... Building plugins/BeanShell_Interpreter.jar <- src-plugins/BSH/BSH_... Building plugins/register_virtual_stack_slices.jar <- src-plugins/... src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:50: cannot find symbol symbol : class SimilarityModel2D location: package mpicbg.trakem2.transform import mpicbg.trakem2.transform.SimilarityModel2D; ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:488: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT featuresModel = new SimilarityModel2D(); ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1035: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT case Register_Virtual_Stack_MT.SIMILARITY: t = new SimilarityModel2D(); break; ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1411: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT featuresModel = new SimilarityModel2D(); ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1487: cannot find symbol symbol : method set(int,double[][],double[][],int,int) location: class bunwarpj.trakem2.transform.CubicBSplineTransform ((CubicBSplineTransform) t).set(warp.getIntervals(), warp.getDirectDeformationCoefficientsX(), warp.getDirectDeformationCoefficientsY(), ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1549: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT case Register_Virtual_Stack_MT.SIMILARITY: t = new SimilarityModel2D(); break; ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1596: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT if( t instanceof AffineModel2D || t instanceof SimilarityModel2D ) ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1598: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT final AffineTransform a = (t instanceof AffineModel2D) ? ((AffineModel2D)t).createAffine() : ((SimilarityModel2D)t).createAffine(); ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1660: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT ((SimilarityModel2D)t).set( (float) b.getScaleX(), (float) b.getShearY(), (float) b.getTranslateX(), (float) b.getTranslateY() ); ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1777: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT if( t instanceof AffineModel2D || t instanceof SimilarityModel2D ) ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1779: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT final AffineTransform a = (t instanceof AffineModel2D) ? ((AffineModel2D)t).createAffine() : ((SimilarityModel2D)t).createAffine(); ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1819: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT if( transform[i] instanceof AffineModel2D || transform[i] instanceof SimilarityModel2D ) ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1823: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT ((SimilarityModel2D)transform[i]).createAffine(); ^ src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java:1835: cannot find symbol symbol : class SimilarityModel2D location: class register_virtual_stack.Register_Virtual_Stack_MT ((SimilarityModel2D)transform[i]).set( (float) b.getScaleX(), (float) b.getShearY(), (float) b.getTranslateX(), (float) b.getTranslateY() ); ^ Note: src-plugins/register_virtual_stack_slices/register_virtual_stack/Register_Virtual_Stack_MT.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 errors Compile error in rule plugins/register_virtual_stack_slices.jar <- src-plugins/... in rule all <- fiji ij.jar plugins/loci_tools.jar plugins/VIB_.ja...